SCN Proteipedia

Hg_chrom8_TN10mRNA_15394

Organism: Heterodera glycines Gene Locus: chr8:4372504-4379842 Feature type: polypeptide

Protein Sequence

Length: 1,397

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.249	1.082	0.612	0.716	1.3	1.615	1.014	1.432	0.477	0.842	0.618	0.884	0.756	1.5	1.213	1.677	1.009	0.694	0.165	0.168	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14538	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PAAKRRC,TKRRRGRPRKK	—	—	55-123	0.997	—	—	0.000	—	—	0.957	0.062	0.036	0.210	0.065	0.014	0.013	0.038	0.043	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001422	1.000	4.000	Hsc_gene_3077.t1;Hsc_gene_3077.t2;Hsc_gene_3112.t1;Hsc_gene_5509.t1	Hsc_gene_3077.t1;Hsc_gene_3077.t2;Hsc_gene_5509.t1	—	Q99PV8.1 B-cell lymphoma/leukemia 11B [Mus musculus]	KAH7730888.1 zinc finger protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.908\|GO:0009987_0.868\|GO:0005575_0.854\|GO:0110165_0.845\|GO:0065007_0.818\|GO:0050789_0.807\|GO:0005622_0.795\|GO:0050794_0.790\|GO:0003674_0.764\|GO:0008152_0.759\|GO:0019222_0.759\|GO:0031323_0.759\|GO:0044237_0.759\|GO:0005488_0.756\|GO:0044238_0.754\|GO:0080090_0.754\|GO:0043170_0.750\|GO:0009058_0.746\|GO:0009059_0.746\|GO:0010467_0.746\|GO:0044249_0.746\|GO:0060255_0.746\|GO:0043226_0.744\|GO:0006139_0.733\|GO:0009889_0.733\|GO:0010468_0.733\|GO:0010556_0.733\|GO:0016070_0.733\|GO:0031326_0.733\|GO:0032774_0.733\|GO:0034654_0.733\|GO:0043229_0.733\|GO:0090304_0.733\|GO:0141187_0.733\|GO:0016020_0.727\|GO:0019219_0.714\|GO:0051252_0.714\|GO:0006351_0.708\|GO:0006355_0.708\|GO:2001141_0.708\|GO:0043227_0.643\|GO:0043231_0.639\|GO:0005634_0.618\|GO:0097159_0.617\|GO:0003676_0.610\|GO:0003677_0.534\|GO:0032502_0.515\|GO:0006357_0.510\|GO:0006366_0.510\|GO:0048519_0.504	IPR013087+615-638_1123-1145_1123-1150_1124-1145_1125-1145_1151-1173_1151-1178_1153-1173_1181-1201_1181-1202_1181-1211+\|IPR036236+1124-1173_1162-1201+\|IPR051497+384-779+	SM00355+615-638_1123-1145_1151-1173_1181-1201+	PF00096+1124-1145_1151-1173_1181-1202+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000046+1151-1174+Putative_B-cell_lymphoma/leukemia_11A	PTHR45993+384-779+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-43;81-802;914-1123;1244-1397	3.000	44-80;803-913;1124-1243	8tho_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.901	147747.690	6.668	4.000	24.052	6.371	52.899	47.101	12.885	11.167	59.628

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	4387.577	14055.767	6339.757	3626.182	2158.387	4411.522	1772.343	3972.301	5671.965	1315.577	3182.600

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.378	-2.092	-0.698	-0.780	1.046	-1.306	—	-1.024	1.994	—	—	—	—

No JSON data available for plots.

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