SCN Proteipedia

Hg_chrom9_TN10mRNA_17123

Organism: Heterodera glycines Gene Locus: chr9:3073932-3076921 Feature type: polypeptide

Protein Sequence

Length: 792

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.573	1.38	0.964	0.435	1.263	0.971	0.676	1.263	0.87	1.058	0.803	1.337	1.508	1.093	1.314	1.118	1.097	0.842	1.845	1.077	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16176	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	LGEV	—	—	—	—	—	—	0.000	—	—	0.465	0.122	0.026	0.744	0.193	0.311	0.187	0.026	0.339	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012688	1.000	1.000	Hsc_gene_548.t1	Hsc_gene_548.t1	—	Q9N2Z7.2 E3 ubiquitin-protein ligase wwp-1 [Caenorhabditis elegans]	KAI1726866.1 HECT-domain (ubiquitin-transferase) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004842\|GO:0005515\|GO:0006511\|GO:0061630	GO:0008150_0.941\|GO:0005575_0.903\|GO:0110165_0.895\|GO:0009987_0.843\|GO:0005622_0.819\|GO:0003674_0.818\|GO:0065007_0.776\|GO:0050789_0.758\|GO:0005737_0.704\|GO:0003824_0.680\|GO:0008152_0.674\|GO:0050794_0.671\|GO:0044238_0.658\|GO:0043170_0.652\|GO:0140096_0.638\|GO:0016020_0.622\|GO:0019538_0.613\|GO:0016740_0.599\|GO:0043226_0.578\|GO:0050896_0.563\|GO:0048519_0.560\|GO:0016746_0.559\|GO:0016755_0.554\|GO:0019787_0.554\|GO:0004842_0.552\|GO:0032501_0.548\|GO:0043229_0.524\|GO:0009056_0.514\|GO:0048523_0.503	IPR000008+1-111_17-110_29-110+\|IPR000569+438-790_456-792_458-792_488-791+\|IPR001202+223-256_224-256_225-254_226-254_229-254_257-290_258-290_259-288_260-289_263-288_324-358_325-358_326-356_327-357_330-356_364-397_365-397_366-395_367-396_370-395+\|IPR024928+14-207_145-258_255-321_314-792+\|IPR035892+15-150_28-108+\|IPR035983+419-785+\|IPR036020+216-254_255-290_316-359_364-398+\|IPR050409+41-791+	SM00119+456-792+\|SM00239+17-110+\|SM00456+224-256_258-290_325-358_365-397+	PF00168+29-110+C2_domain\|PF00397+225-254_259-288_326-356_366-395+WW_domain\|PF00632+488-791+HECT-domain_(ubiquitin-transferase)	G3DSA:2.20.70.10:FF:000005+317-360+E3_ubiquitin-protein_ligase\|G3DSA:3.30.2160.10:FF:000003+560-638+E3_ubiquitin-protein_ligase\|G3DSA:3.30.2410.10:FF:000002+675-792+E3_ubiquitin-protein_ligase_HECW2\|G3DSA:3.90.1750.10:FF:000079+414-587+E3_ubiquitin-protein_ligase	PTHR11254+41-791+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	108-410	2.000	1-107;411-792	6j1z_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.719	91241.500	6.590	1.000	27.146	14.015	51.389	48.611	14.268	12.879	48.864

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	yellow	2306.469	4524.039	2406.057	1791.904	2154.505	3789.693	2879.975	3842.274	1403.571	1017.456	1182.934

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.139	-1.473	-0.317	0.234	0.830	-0.388	—	-0.275	—	—	—	—	—

No JSON data available for plots.

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